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Culture methods are available to test for sewage contamination in buildings (M117 & M013) as well as new Bacteroides PCR based methods. The Bacteroides test has many advantages over the traditional culture tests for total coliforms, fecal coliforms, fecal streptococci, enterococci and E.coli tests, including:
  • Bacteroides is specific for fecal contamination from all sources–animals, birds, and human.
  • Coliforms, E.coli, fecal streptococci and enterococci can grow in water, soil, sediments and on vegetation in uncontaminated environments. (Note: E.coli can be found in pristine tropical environments).

  • Because they are anaerobic, Bacteroides will not multiply in the environment.

  • Bacteroides out number coliforms by 1.000:1 and outnumber E.coli by 10,000:1; therefore, the chance of finding Bacteroides is greatly increased.

  • Traditional culture based tests rely on the presence of live bacteria. Unfortunately these bacteria often will not be viable in indoor environments. THIS MEANS THAT A NEGATIVE COLIFORM or E.coli RESULT FROM AN INDOOR SAMPLE MAY NOT PROVE THE ABSENCE OF FECAL CONTAMINATION. The Bacteroides test overcomes this limitation.  Since PCR is used, the laboratory can detect live, nonviable or viable-but-not-culturable bacteria.

  • Using Total Bacteroides (M095), it is now possible to determine the amount of fecal contamination from non-human and human sources.

  • Using Human Bacteroides (M199) determines the amount of fecal contamination from human sources only.

Sampling Procedure:
For sampling Bacteroides it is important to wear sterile nitrile gloves. Change the gloves frequently between samples if you are collecting many samples to prevent accidental cross-contamination.

Soil Samples:
Use a 120 ml sterile bottle. (Preserved bottles are not required for this test but if it is present, that is OK). Do not use tools for digging the soil since they may have been previously contaminated with fecal bacteria unintentionally. Instead use the rim of the opened bottle to loosen the soil. Drag the bottle along the soil to be sampled to scoop the soil into the bottle. Repeat if necessary to collect get at least half a bottle of sample. Use a separate bottle for each sample.

Stormwater, Groundwater or Surface Water:
Use a 1000 ml sterile bottle as a minimum.  A larger sample size is better in the event the Bacteroides concentration in these samples is very dilute. EMSL also supplies 10 L sterile containers for a fee. Use a separate bottle for each sample and each different bacterial test.

Well Water:
Use a 1000 ml or 10 L sterile container.
REMEMBER that Bacteroides testing should not be done for an NPDES permit. EPA is still evaluating the test for this purpose. Use the culture fecal bacterial indicator tests specified in the permit instead.

Surface (wipe) Sampling:
1. Obtain a sterile 1mL Butterfield's solution swab (EMSL Product ID 8708935) or a pre-moistened sterile transport swab (EMSL Product ID 8708301 or 8708301B to collect and transport samples (provided at your request by EMSL). 

2. With sterile nitrile gloves on, prepare separate 4”x4” sampling grids for each sample to be taken. Do not re-use sampling grids since you will be cross-contaminating your samples.  Alternatively purchase pre-packaged electrical, masking or paint tape to mark out the 4”x4” areas to be sampled and then swab inside that area.  Do not re-use the tape since you will be cross-contaminating your samples.

3. Change nitrile gloves. With sterile nitrile gloves on, remove swab from sterile packaging. 

4. Carefully remove the swab from the container being sure not to accidentally touch swabs to anything other than the site to be sampled.

5. Hold swab at an approximate 30° angle from the sampling surface, taking care not to contaminate any part of the swab.

6. Using firm, even pressure, move the swab slowly and thoroughly over an entire 4" x 4" sampling area using the picture below as a guide. Rotate the swab 180 degrees between the latitudinal and the longitudinal passes.

7. To minimize sampling variability between samples, get in the habit of doing 6 latitudinal and 6 longitudinal passes only.  Use the picture below as a guide. If you are unfamiliar taking samples this way, it is a good idea to practice your sampling technique before going to the site.

8. After sampling is complete, carefully put swab back into its transport container and seal.

9. Label the samples using a permanent ink marker.

10. ALWAYS take background samples in non-fecally contaminated areas to determine if there is background contamination from an unidentified event that may bias your results.

Bulk Sampling:
2”x2” sample size of carpet, wall board, flooring, clothing. Purchase sterile rubbing or isopropanol alcohol. Use disinfected scissors or cutting knives only. Do not re-use these without disinfecting between samples or you will be cross-contaminating your samples.

1. Don a pair of sterile, nitrile gloves.  Pour the alcohol over the cutting blade and allow to air dry before each sample to be taken.

2. Use a clean, unused ziplock bag for each sample taken.  Label each bag with a permanent marker. Use a different sample identifier for each sample taken.

Sample Shipping:
  • Be sure to label each sample with a unique identifier using a permanent marker.
  • There are no special shipping requirements since Bacteroides will not multiply outside of the intestine.
  • There is no hold time, however, ship the samples back to the lab as quickly as possible (overnight is ideal). For shipping, use an insulated container.  No freezer packs are required.
    • Swabs for M177 (conventional culture testing) should be shipped overnight in insulated container with ice packs.
    • Swabs for M199 (qPCR testing for Human Bacteroides) can be shipped by regular mail. No refrigeration is required.

Water Fecal/Sewage Contamination and Microbial Source Tracking

Full list of services provided for Bacteroides ( click for details )
Laboratories providing Bacteroides ( click for details )
Atlanta, GA (LAB 07) - NVLAP Lab Code 101048-1Baton Rouge, LA (LAB 25) - NVLAP Lab Code 200375-0Beltsville, MD (LAB 19) - NVLAP Lab Code 200293-0Boston, MA (LAB 13) - NVLAP Lab Code 101147-0Buffalo, NY (LAB 14) - NVLAP Lab Code 200056-0Carle Place, NY (LAB 06) - NVLAP Lab Code 101048-10Charlotte, NC (LAB 41) - NVLAP Lab Code 200841-0Chicago, IL (LAB 26) - NVLAP Lab Code 200399-0Cinnaminson, NJ (LAB List in Description) - NVLAP Lab Code 101048-0Dallas, TX (LAB 11) - NVLAP Lab Code 600111-0Denver, CO (LAB 22) - NVLAP Lab Code 200828-0EMSL Canada - Calgary, AB (LAB 65) - NVLAP Lab Code 500100-0EMSL Canada - Edmonton, AB (LAB 50) - NVLAP Lab Code 600321-0EMSL Canada - Markham, ON (LAB 66) - NVLAP Lab Code 600317-0EMSL Canada - Montreal, QC (LAB 68) - NVLAP Lab Code 201052-0EMSL Canada - Ottawa, ON (LAB 67) - NVLAP Lab Code 201040-0EMSL Canada - Toronto, ON (LAB 55) - NVLAP Lab Code 200877-0EMSL Canada - Vancouver, BC (LAB 69) - NVLAP Lab Code 201068-0Fort Lauderdale, FL (LAB 56) - NVLAP Lab Code 500085-0Houston, TX (LAB 15) - NVLAP Lab Code 102106-0Huntington Beach, CA (LAB 33) - NVLAP Lab Code 101384-0Indianapolis, IN (LAB 16) - NVLAP Lab Code 200188-0Kernersville, NC (LAB 02) - NVLAP Lab Code 102104-0Las Vegas, NV (LAB 31) - NVLAP Lab Code 600140-0Long Island City, NY (LAB 03) - NVLAP Lab Code 101048-9Meriden, CT (LAB 24) - NVLAP Lab Code 200700-0Miami, FL (LAB 17) - NVLAP Lab Code 200204-0Minneapolis, MN (LAB 35) - NVLAP Lab Code 200019-0Ontario, California (San Bernadino County / Inland Empire) (LAB 71) - NVLAP Lab Code 600239-0Orlando, FL (LAB 34) - NVLAP Lab Code 101151-0Phoenix, AZ (LAB 12) - NVLAP Lab Code 200811-0Piscataway, NJ (LAB 05) - NVLAP Lab Code 101048-2Plymouth Meeting, PA (LAB 18) - NVLAP Lab Code 200699-0Raleigh, NC (LAB 29) - NVLAP Lab Code 200671-0Rochester, NY (LAB 53) - NVLAP Lab Code 600183-0San Diego, CA (LAB 43) - NVLAP Lab Code 200855-0San Leandro, CA (LAB 09) - NVLAP Lab Code 101048-3Santa Clara, CA (LAB 47) - NVLAP Lab Code 600318-0Seattle, WA (LAB 51) - NVLAP Lab Code 200613-0South Pasadena, CA (LAB 32) - NVLAP Lab Code 200232-0South Portland, ME (LAB 62) - NVLAP Lab Code 500094-0St. Louis, MO (LAB 39) - NVLAP Lab Code 200742-0Syracuse, NY (LAB 73) - NVLAP Lab Code 600283-0Tampa, FL (LAB 93) - NVLAP Lab Code 600215-0
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